miRBase entry: aca-mir-208

Stem-loop aca-mir-208


Accession
MI0018811
Description
Anolis carolinensis aca-mir-208 precursor miRNA
Gene family
MIPF0000178; mir-208


Sequence

guuuccucuaacaaggAAGCUUUUGGCUCGGGUUAUAUuuuagaauggcaguguAUAAGACGAGCAAAAAGCUUGUugguuggaggagaa
.(((((((((((.((.((((((((.(((((..((((((..............))))))..))))).)))))))).)).))))))))))).

Structure
g           a  g        G     GG      uuuaga 
 uuuccucuaac ag AAGCUUUU GCUCG  UUAUAU      a
 ||||||||||| || |||||||| |||||  ||||||       
 agaggagguug uU UUCGAAAA CGAGC  AAUAug      u
a           g  G        A     AG      ugacgg 


Annotation confidence Not enough data
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Genome context
GL343680.1: 158509-158598 [+]

Database links

Mature aca-miR-208-5p

Accession MIMAT0021859
Description Anolis carolinensis aca-miR-208-5p mature miRNA
Sequence 17 - AAGCUUUUGGCUCGGGUUAUAU - 38
Evidence experimental
Illumina [1]

Mature aca-miR-208-3p

Accession MIMAT0021860
Description Anolis carolinensis aca-miR-208-3p mature miRNA
Sequence 55 - AUAAGACGAGCAAAAAGCUUGU - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107