miRBase entry: aca-mir-20a

Stem-loop aca-mir-20a


Accession
MI0018812
Description
Anolis carolinensis aca-mir-20a precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

ccuguagcacUAAAGUGCUUAUAGUGCAGGUAgugauuaauaaucuACUGCAUUACGAGCACUUAAAGUacugcuagcugua
...((((.(((.((((((((.((((((((.(((...........))))))))))).))))))))..))).))))........

Structure
-----ccu    c   -A        A        G   ugau 
        guag acU  AAGUGCUU UAGUGCAG UAg    u
        |||| |||  |||||||| |||||||| |||    a
        cguc UGA  UUCACGAG AUUACGUC Auc    a
augucgau    a   AA        C        -   uaau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL343584.1: 108689-108770 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from aca-mir-20a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-20a-5p

Accession MIMAT0021861
Description Anolis carolinensis aca-miR-20a-5p mature miRNA
Sequence 11 - UAAAGUGCUUAUAGUGCAGGUA - 32
Evidence experimental
Illumina [1]

Mature aca-miR-20a-3p

Accession MIMAT0021862
Description Anolis carolinensis aca-miR-20a-3p mature miRNA
Sequence 47 - ACUGCAUUACGAGCACUUAAAGU - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107