Stem-loop aca-mir-222a

Accession

MI0018829

Description

Anolis carolinensis aca-mir-222a precursor miRNA

Gene family

MIPF0000051; mir-221

Sequence

uguagcuguuccucagucGCUCAGUAGUCAGUGUAGAUUCugucuucucaaucagcAGCUACAUCUGGCUACUGGGUCucugaggacaucuugu
...((.(((.((((((..((((((((((((((((((...(((..........)))...))))).)))))))))))))..))))))))).))...

Structure

ugu  c   u      uc             -     AUU   ucuu 
   ag ugu ccucag  GCUCAGUAGUCAG UGUAG   Cug    c
   || ||| ||||||  ||||||||||||| |||||   |||     
   uc aca ggaguc  UGGGUCAUCGGUC ACAUC   gac    u
ugu  u   -      uC             U     GAc   uaac 

Annotation confidence Not enough data

Genome context

chr3: 135997318-135997411 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-222a

Mature aca-miR-222a-5p

• Accession: MIMAT0021891
• Description: Anolis carolinensis aca-miR-222a-5p mature miRNA
• Sequence: 19 - GCUCAGUAGUCAGUGUAGAUUC - 40
• Evidence: experimental ; Illumina [1]

Mature aca-miR-222a-3p

• Accession: MIMAT0021892
• Description: Anolis carolinensis aca-miR-222a-3p mature miRNA
• Sequence: 57 - AGCUACAUCUGGCUACUGGGUC - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107