miRBase entry: aca-mir-24-2

Stem-loop aca-mir-24-2


Accession
MI0018834
Description
Anolis carolinensis aca-mir-24-2 precursor miRNA
Gene family
MIPF0000041; mir-24


Sequence

ggauggacccguccuccggUGCCUACUGAGCUGAUAUCAGuucugauuuuacacacUGGCUCAGUUCAGCAGGAACAGgagucgagcccuaaa
....((.(.((..((((.((.(((.(((((((((..(((((..((......)).))))).))))))))).))).)).)))).)).).))....

Structure
ggau  a c  uc    g  G   A         UA     uc  au 
    gg c cg  cucc gU CCU CUGAGCUGA  UCAGu  ug  u
    || | ||  |||| || ||| |||||||||  |||||  ||   
    cc g gc  gagG CA GGA GACUUGACU  GGUca  ac  u
aaau  c a  -u    A  A   C         -C     -c  au 


Annotation confidence Not enough data
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Genome context
chr2: 40591310-40591402 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from aca-mir-24-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-24-3p

Accession MIMAT0021900
Description Anolis carolinensis aca-miR-24-3p mature miRNA
Sequence 57 - UGGCUCAGUUCAGCAGGAACAG - 78
Evidence experimental
Illumina [1]

Mature aca-miR-24-2-5p

Accession MIMAT0021901
Description Anolis carolinensis aca-miR-24-2-5p mature miRNA
Sequence 20 - UGCCUACUGAGCUGAUAUCAG - 40
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107