miRBase entry: aca-mir-27a

Stem-loop aca-mir-27a


Accession
MI0018837
Description
Anolis carolinensis aca-mir-27a precursor miRNA
Gene family
MIPF0000036; mir-27

Literature search
1 open access papers mention aca-mir-27a
(1 sentences)

Sequence

agccguAGGGCUUAGCCCACCUGUGAACagcauuggauucagccaugUUCACAGUGGCUAAGUUCCGCugcuu
(((.((.((((((((((...(((((((((....(((......)))))))))))).)))))))))).)).))).

Structure
-   c  A          CAC         gcau   au 
 agc gu GGGCUUAGCC   CUGUGAACa    ugg  u
 ||| || ||||||||||   |||||||||    |||   
 ucg CG CUUGAAUCGG   GACACUUgu    acc  c
u   u  C          --U         ----   ga 


Annotation confidence Not enough data
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Genome context
chr2: 29157932-29158004 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from aca-mir-27a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-27a-5p

Accession MIMAT0021905
Description Anolis carolinensis aca-miR-27a-5p mature miRNA
Sequence 7 - AGGGCUUAGCCCACCUGUGAAC - 28
Evidence experimental
Illumina [1]

Mature aca-miR-27a-3p

Accession MIMAT0021906
Description Anolis carolinensis aca-miR-27a-3p mature miRNA
Sequence 48 - UUCACAGUGGCUAAGUUCCGC - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107