Stem-loop aca-mir-29a-1

Accession

MI0018840

Description

Anolis carolinensis aca-mir-29a-1 precursor miRNA

Gene family

MIPF0000009; mir-29

Sequence

gucaccccuuuaaaggaugacUGAUUUCUUCUGGUGUUCGGAgucuaguucucuuucUAGCACCAUUUGAAAUCGGUUauagugauuggggaauauc
....((((........((((((((((((...(((((((.((((.......))))....)))))))...)))))))))))).......))))......

Structure

--guca    uuuaaagg            UUC       ---C    uc 
      cccc        augacUGAUUUC   UGGUGUU    GGAg  u
      ||||        ||||||||||||   |||||||    ||||  a
      gggg        uaUUGGCUAAAG   ACCACGA    ucuc  g
cuauaa    -uuaguga            UUU       Ucuu    uu 

Annotation confidence Not enough data

Genome context

chr5: 1036133-1036229 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-29a-1

Mature aca-miR-29a-1-5p

• Accession: MIMAT0021911
• Description: Anolis carolinensis aca-miR-29a-1-5p mature miRNA
• Sequence: 22 - UGAUUUCUUCUGGUGUUCGGA - 42
• Evidence: experimental ; Illumina [1]

Mature aca-miR-29a-3p

• Accession: MIMAT0021912
• Description: Anolis carolinensis aca-miR-29a-3p mature miRNA
• Sequence: 58 - UAGCACCAUUUGAAAUCGGUU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107