Stem-loop aca-mir-30b

Accession

MI0018848

Description

Anolis carolinensis aca-mir-30b precursor miRNA

Gene family

MIPF0000005; mir-30

Sequence

uacugauuuuuaguucaUGUAAACAUCCUACACUCAGCUguaucacaugaaauggCUGGGAGAUGAAUGUUUACUUCaacugauuugg
.........((((((...((((((((.(....(((((((((.((....)).)))))))))....).))))))))...)))))).....

Structure

uacugauuu      caU        C UACA         a  a 
         uuaguu   GUAAACAU C    CUCAGCUgu uc c
         ||||||   |||||||| |    ||||||||| ||  
         agucaa   CAUUUGUA G    GGGUCggua ag a
----gguuu      CUU        A UAGA         a  u 

Annotation confidence Not enough data

Genome context

chr4: 1747976-1748063 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-30b

Mature aca-miR-30b-5p

• Accession: MIMAT0021922
• Description: Anolis carolinensis aca-miR-30b-5p mature miRNA
• Sequence: 18 - UGUAAACAUCCUACACUCAGCU - 39
• Evidence: experimental ; Illumina [1]

Mature aca-miR-30b-3p

• Accession: MIMAT0021923
• Description: Anolis carolinensis aca-miR-30b-3p mature miRNA
• Sequence: 56 - CUGGGAGAUGAAUGUUUACUUC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107