miRBase entry: aca-mir-30c-1

Stem-loop aca-mir-30c-1


Accession
MI0018849
Description
Anolis carolinensis aca-mir-30c-1 precursor miRNA
Gene family
MIPF0000005; mir-30


Sequence

ccaagugacagguaaUGUAAACAUCCUACACUCUCAGCuguguagauaagaagaaagCUGGGAGAAGGCUGUUUACUCUcucugccuuggaaa
(((((.(.((((....(((((((.(((...(((((((((................))))))))).))).)))))))....))))))))))...

Structure
---     u a    uaaU       U   ACA         guguaga 
   ccaag g cagg    GUAAACA CCU   CUCUCAGCu       u
   ||||| | ||||    ||||||| |||   |||||||||        
   gguuc c gucu    CAUUUGU GGA   GAGGGUCga       a
aaa     - -    cUCU       C   --A         aagaaga 


Annotation confidence Not enough data
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Genome context
chr1: 168132504-168132596 [-]

Database links

Mature aca-miR-30c-5p

Accession MIMAT0021924
Description Anolis carolinensis aca-miR-30c-5p mature miRNA
Sequence 16 - UGUAAACAUCCUACACUCUCAGC - 38
Evidence experimental
Illumina [1]

Mature aca-miR-30c-3p

Accession MIMAT0021925
Description Anolis carolinensis aca-miR-30c-3p mature miRNA
Sequence 58 - CUGGGAGAAGGCUGUUUACUCU - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107