miRBase entry: aca-mir-30d

Stem-loop aca-mir-30d


Accession
MI0018850
Description
Anolis carolinensis aca-mir-30d precursor miRNA
Gene family
MIPF0000005; mir-30


Sequence

acaguagucuguuguUGUAAACAUCCCCGACUGGAAGcuguaaauuucagcUUUCAGUCAGAUGUUUGCUGCcaccggcuauuca
..(((((((.((.((.(((((((((...((((((((((((.......)))))))))))).))))))))).)).)).)))))))..

Structure
ac       u  u  U         CCC            ua 
  aguaguc gu gu GUAAACAUC   GACUGGAAGcug  a
  ||||||| || || |||||||||   ||||||||||||  a
  uuaucgg ca CG CGUUUGUAG   CUGACUUUcgac  u
ac       c  c  U         --A            uu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 1751109-1751193 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-mir-30d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-30d-5p

Accession MIMAT0021926
Description Anolis carolinensis aca-miR-30d-5p mature miRNA
Sequence 16 - UGUAAACAUCCCCGACUGGAAG - 37
Evidence experimental
Illumina [1]

Mature aca-miR-30d-3p

Accession MIMAT0021927
Description Anolis carolinensis aca-miR-30d-3p mature miRNA
Sequence 52 - UUUCAGUCAGAUGUUUGCUGC - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107