Stem-loop aca-mir-34c

Accession

MI0018859

Description

Anolis carolinensis aca-mir-34c precursor miRNA

Gene family

MIPF0000039; mir-34

Sequence

ugguuuguAGGCAGUGUAGUUAGCUGAUUGugagguuuccuuggcAAUCACUAGCUUUACUGUCAUcaaaaca
((..(((..(((((((.((((((.(((((((.(((....))).))))))))))))).)))))))..)))..))

Structure

  gu   uA       U      C       g   u 
ug  uug  GGCAGUG AGUUAG UGAUUGu agg u
||  |||  ||||||| |||||| ||||||| |||  
ac  aac  CUGUCAU UCGAUC ACUAAcg uuc u
  aa   UA       U      -       g   c 

Annotation confidence Not enough data

Genome context

GL343521.1: 197479-197551 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-34c

Mature aca-miR-34c-5p

• Accession: MIMAT0021943
• Description: Anolis carolinensis aca-miR-34c-5p mature miRNA
• Sequence: 9 - AGGCAGUGUAGUUAGCUGAUUG - 30
• Evidence: experimental ; Illumina [1]

Mature aca-miR-34c-3p

• Accession: MIMAT0021944
• Description: Anolis carolinensis aca-miR-34c-3p mature miRNA
• Sequence: 46 - AAUCACUAGCUUUACUGUCAU - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107