miRBase entry: aca-mir-425

Stem-loop aca-mir-425


Accession
MI0018865
Description
Anolis carolinensis aca-mir-425 precursor miRNA
Gene family
MIPF0000242; mir-425


Sequence

gcaggaaugguuuuggAAUGACACGAUCACUCCCGCUgagcgagcagagccacggCCACGGGGAUGUCGUGUCUGUCcaaaacuauuucaaa
...((((((((((((((..(((((((.((.(((((.((.((..((...))....))))))))).)))))))))..))))))))))))))...

Structure
gca              AU       U  C     C  a  --ga  a 
   ggaaugguuuuggA  GACACGA CA UCCCG Ug gc    gc  
   ||||||||||||||  ||||||| || ||||| || ||    || g
   cuuuaucaaaacCU  CUGUGCU GU GGGGC AC Cg    cg  
aaa              GU       -  A     -  -  gcac  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr2: 187863021-187863112 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from aca-mir-425
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-425-5p

Accession MIMAT0021954
Description Anolis carolinensis aca-miR-425-5p mature miRNA
Sequence 17 - AAUGACACGAUCACUCCCGCU - 37
Evidence experimental
Illumina [1]

Mature aca-miR-425-3p

Accession MIMAT0021955
Description Anolis carolinensis aca-miR-425-3p mature miRNA
Sequence 56 - CCACGGGGAUGUCGUGUCUGUC - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107