Stem-loop aca-mir-9-3

Accession

MI0018890

Description

Anolis carolinensis aca-mir-9-3 precursor miRNA

Gene family

MIPF0000014; mir-9

Literature search

1 open access papers mention aca-mir-9-3
(2 sentences)

Sequence

cagggccggcucuucUCUUUGGUUAUCUAGCUGUAugagugcgccugguuucaUAAAGCUAGAGAACCGAACGUAcgaaccggcccga
..(((((((.((.....(((((((.(((((((.((((((.((.....)))))))).))))))).))))))).....)).)))))))..

Structure

ca       c  uucUC       A       G      u  g 
  gggccgg uc     UUUGGUU UCUAGCU UAugag gc c
  ||||||| ||     ||||||| ||||||| |||||| || c
  cccggcc ag     AAGCCAA AGAUCGA AUacuu ug u
ag       a  cAUGC       G       A      -  g 

Annotation confidence Not enough data

Genome context

Unknown

Mature aca-miR-9-5p

• Accession: MIMAT0021990
• Description: Anolis carolinensis aca-miR-9-5p mature miRNA
• Sequence: 16 - UCUUUGGUUAUCUAGCUGUA - 35
• Evidence: experimental ; Illumina [1]

Mature aca-miR-9-3-3p

• Accession: MIMAT0021992
• Description: Anolis carolinensis aca-miR-9-3-3p mature miRNA
• Sequence: 54 - UAAAGCUAGAGAACCGAACGUA - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107