miRBase entry: aca-mir-99b

Stem-loop aca-mir-99b


Accession
MI0018895
Description
Anolis carolinensis aca-mir-99b precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

gccauaAACCCGUAGAUCCGAACUUGCGGuacaacugauucacaCAAGCUCGAGUCUGUGGGUAUguguc
..((((.((((((((((.(((.((((.(..............).)))).))).)))))))))).))))..

Structure
gc    A          C   A    C Guacaa 
  caua ACCCGUAGAU CGA CUUG G      c
  |||| |||||||||| ||| |||| |       
  gugU UGGGUGUCUG GCU GAAC c      u
cu    A          A   C    a acuuag 


Annotation confidence Not enough data
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Genome context
GL343604.1: 262454-262523 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-mir-99b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-99b-5p

Accession MIMAT0021998
Description Anolis carolinensis aca-miR-99b-5p mature miRNA
Sequence 7 - AACCCGUAGAUCCGAACUUGCGG - 29
Evidence experimental
Illumina [1]

Mature aca-miR-99b-3p

Accession MIMAT0021999
Description Anolis carolinensis aca-miR-99b-3p mature miRNA
Sequence 45 - CAAGCUCGAGUCUGUGGGUAU - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107