miRBase entry: aca-mir-5400

Stem-loop aca-mir-5400


Accession
MI0018902
Description
Anolis carolinensis aca-mir-5400 precursor miRNA


Sequence

uuggaugaggugguuggaaucaucuccugcagagcucuaguccauucuccugagcaUUAGCACUCUGCAGGAAAGAACgcuaagcaccucauuaaa
...(((((((((.((((.......((((((((((..(((((...(((....))).)))))..)))))))))).......)))).)))))))))...

Structure
uug         g    aaucauc          cu     cca   u 
   gaugaggug uugg       uccugcagag  cuagu   uuc c
   ||||||||| ||||       ||||||||||  |||||   |||  
   uuacuccac aauc       AGGACGUCUC  GAUUa   gag c
aaa         g    gCAAGAA          AC     --c   u 


Annotation confidence Not enough data
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Genome context
chr1: 67800013-67800108 [+]

Database links

Mature aca-miR-5400

Accession MIMAT0022010
Description Anolis carolinensis aca-miR-5400 mature miRNA
Sequence 57 - UUAGCACUCUGCAGGAAAGAAC - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107