miRBase entry: aca-mir-5406

Stem-loop aca-mir-5406

Accession

MI0018909

Description

Anolis carolinensis aca-mir-5406 precursor miRNA

Sequence

acaguucuucCUUUUAGACUGGCACUCCUAGAaucucuccgaacaucUAGGAGCGAAACUCUAAAAGAagaaccuc
...(((((((.(((((((.(..(.((((((((.((.....))...)))))))).)..).))))))))))))))...

Structure

aca       C       C GG A        --a  u 
   guucuuc UUUUAGA U  C CUCCUAGA   uc c
   ||||||| ||||||| |  | ||||||||   || u
   caagaAG AAAAUCU A  G GAGGAUcu   ag c
cuc       -       C AA C        aca  c

Annotation confidence Not enough data

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Genome context

GL343282.1: 1474906-1474981 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from aca-mir-5406

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-5406-5p

Accession	MIMAT0022020
Description	Anolis carolinensis aca-miR-5406-5p mature miRNA
Sequence	11 - CUUUUAGACUGGCACUCCUAGA - 32
Evidence	experimental Illumina [1]

Mature aca-miR-5406-3p

Accession	MIMAT0022021
Description	Anolis carolinensis aca-miR-5406-3p mature miRNA
Sequence	48 - UAGGAGCGAAACUCUAAAAGA - 68
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107