miRBase entry: aca-mir-5408a

Stem-loop aca-mir-5408a


Accession
MI0018911
Description
Anolis carolinensis aca-mir-5408a precursor miRNA
Gene family
MIPF0001313; mir-5408


Sequence

agaggguuuggacuCUAUCUCCCAUAAUGCUUAGCcguagcuccgaguggcUAAGACUUCUGGGAGUUGAAGuuccaacccccu
((.(((((.(((((.((.((((((.((..(((((((((........)))))))))..)).)))))).)).))))).))))).))

Structure
  a     u     C  U      U  UG         agc 
ag ggguu ggacu UA CUCCCA AA  CUUAGCcgu   u
|| ||||| ||||| || |||||| ||  |||||||||    
uc cccaa cuuGA GU GAGGGU UU  GAAUcggug   c
  c     c     A  U      C  CA         agc 


Annotation confidence Not enough data
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Genome context
GL343282.1: 1472516-1472599 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from aca-mir-5408a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-5408a-5p

Accession MIMAT0022024
Description Anolis carolinensis aca-miR-5408a-5p mature miRNA
Sequence 15 - CUAUCUCCCAUAAUGCUUAGC - 35
Evidence experimental
Illumina [1]

Mature aca-miR-5408a-3p

Accession MIMAT0022025
Description Anolis carolinensis aca-miR-5408a-3p mature miRNA
Sequence 52 - UAAGACUUCUGGGAGUUGAAG - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107