miRBase entry: aca-mir-5436

Stem-loop aca-mir-5436


Accession
MI0018939
Description
Anolis carolinensis aca-mir-5436 precursor miRNA


Sequence

uugcuggccucaagcAGCUCGCUGGCAGAGACUUUCUggugaagucagacagCAAGUCUUUGCCAGGGAGCUGcuuguggucaguga
(((((((((.((((((((((.(((((((((((((.(((.((....))..))).))))))))))))).)))))))))).)))))))))

Structure
         u          G             U   -g  a 
uugcuggcc caagcAGCUC CUGGCAGAGACUU CUg  ug a
||||||||| |||||||||| ||||||||||||| |||  ||  
agugacugg guucGUCGAG GACCGUUUCUGAA gac  ac g
         u          G             C   ag  u 


Annotation confidence Not enough data
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Genome context
chr4: 151844931-151845017 [+]

Database links

Mature aca-miR-5436-5p

Accession MIMAT0022057
Description Anolis carolinensis aca-miR-5436-5p mature miRNA
Sequence 16 - AGCUCGCUGGCAGAGACUUUCU - 37
Evidence experimental
Illumina [1]

Mature aca-miR-5436-3p

Accession MIMAT0022058
Description Anolis carolinensis aca-miR-5436-3p mature miRNA
Sequence 53 - CAAGUCUUUGCCAGGGAGCUG - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107