miRBase entry: osa-MIR5485

Stem-loop osa-MIR5485


Accession
MI0019003
Description
Oryza sativa osa-MIR5485 precursor miRNA

Literature search
3 open access papers mention osa-MIR5485
(9 sentences)

Sequence

3 reads, 4 reads per million, 1 experiments
cuuggaguggUGACAACUGGUAGCAGAGCAAugucaucuccacuugccgguuguuccugguaugucgagggauacuggugcugacauugcucugauaccaauugucggcacucuaggc
(((((((((.((((((.(((((.(((((((((((((.(.......((((((.((((((.(.....).))))))))))))).))))))))))))).))))).)))))).))))))))).

Structure
-         g      C     G             u uccacuu      u      g u 
 cuuggagug UGACAA UGGUA CAGAGCAAuguca c       gccggu guuccu g a
 ||||||||| |||||| ||||| ||||||||||||| |       |||||| |||||| | u
 ggaucucac gcuguu accau gucucguuacagu g       ugguca uaggga c g
c         g      a     a             c -------      -      g u 


Annotation confidence Not enough data
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Genome context
Chr3: 22088075-22088192 [-]

Database links

Mature osa-miR5485

Accession MIMAT0022118
Description Oryza sativa osa-miR5485 mature miRNA
Sequence 11 - UGACAACUGGUAGCAGAGCAA - 31
Evidence experimental
Illumina [1-2]
Database links

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53

  2. PubMed ID: 22158467
    Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
    "Plant Cell (2011) 23:4185-4207