Stem-loop sequence osa-MIR5494

AccessionMI0019012 (change log)
DescriptionOryza sativa miR5494 stem-loop
Stem-loop 
   a         --------     -g          c  ua  cacg   cu     uu   cuaa 
5'  uuuguuucu        uuaua  gagguauaga gg  gc    uca  uucuu  ugc    u
    |||||||||        |||||  |||||||||| ||  ||    |||  |||||  |||     
3'  gaacaaaga        aguau  uucuaugucu uc  cg    agu  aagag  acg    c
   a         uacgcuac     ag          c  cc  ---a   -c     -c   uacc
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (MSU7) Overlapping transcripts
Chr1: 2317278-2317395 [-]
intergenic
Clustered miRNAs
< 10kb from osa-MIR5494
osa-MIR5494Chr1: 2317278-2317395 [-]
osa-MIR393aChr1: 2309149-2309263 [-]
Database links

Mature sequence osa-miR5494

Accession MIMAT0022127
Sequence

11 -  

uuauaggagguauagacggua

 - 31

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Evidence experimental; Illumina [1]

References

1
PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa" Wei LQ, Yan LF, Wang T Genome Biol. 12:R53(2011).