miRBase entry: osa-MIR5498

Stem-loop osa-MIR5498


Accession
MI0019016
Description
Oryza sativa osa-MIR5498 precursor miRNA


Sequence

24 reads, 21 reads per million, 2 experiments
aacuggugguUGAGCUGUAACACUUGAAGACgcaacuugcacugcauuggcuccugugacgacaauguuguugacuugaccuugcggcugcugaugcuuuggcuucgaacacucucuugcaaagugacauggcuuguaacaguug
(((((.....((((((((..((((((((((........((((((((..((.((..((((((((...)))))).))..)))).))))).)))(((.((....)).))).......)))).).)))))..))))))))...))))).

Structure
-     guggu        AA     - -    ---------------Cgcaacuu   -     uu  c  cu  -      a 
 aacug     UGAGCUGU  CACUU G AAGA                       gca cugca  gg uc  gu gacgac  
 |||||     ||||||||  ||||| | ||||                       ||| |||||  || ||  || |||||| a
 uugac     guucggua  gugaa c uucu                       cgu ggcgu  cc ag  ca uuguug  
g     --aau        ca     a g    cucacaagcuucgguuucguagu   c     -u  -  uu  g      u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr4: 11830694-11830838 [-]

Database links

Mature osa-miR5498

Accession MIMAT0022131
Description Oryza sativa osa-miR5498 mature miRNA
Sequence 11 - UGAGCUGUAACACUUGAAGAC - 31
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53