miRBase entry: osa-MIR5499

Stem-loop osa-MIR5499


Accession
MI0019017
Description
Oryza sativa osa-MIR5499 precursor miRNA

Literature search
1 open access papers mention osa-MIR5499
(1 sentences)

Sequence

uucugcuguuccauguucgauucuucauuuggggaucuaacaucagcgggaaccuuaagucuucuucacauauccauuugauggauagauugccGAAGGAAGAAUCGUUAUGGAAugaugcagau
.(((((.((((((((..(((((((((.(((((.((((((.((((((..(((.....(((....)))......)))..))))))..)))))).))))).))))))))).))))))))...))))).

Structure
u     --u        uu         a     g      -a      cg   -accuu   u 
 ucugc   guuccaug  cgauucuuc uuugg gaucua  caucag  gga      aag c
 |||||   ||||||||  ||||||||| ||||| ||||||  ||||||  |||      |||  
 agacg   uAAGGUAU  GCUAAGAAG AAGcc uuagau  guaguu  ccu      uuc u
u     uag        -U         G     g      ag      ua   auacac   u 


Annotation confidence Not enough data
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Genome context
Chr4: 17241717-17241841 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR5499
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR5499

Accession MIMAT0022132
Description Oryza sativa osa-miR5499 mature miRNA
Sequence 95 - GAAGGAAGAAUCGUUAUGGAA - 115
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53