miRBase entry: osa-MIR5511

Stem-loop osa-MIR5511


Accession
MI0019029
Description
Oryza sativa osa-MIR5511 precursor miRNA

Literature search
1 open access papers mention osa-MIR5511
(1 sentences)

Sequence

reads, None reads per million, experiments
uugguggaagaaggccaaguguuugggauguuggaaauaacuuccuagcuggcuggccuaagaaauuuucauagacaaagagccguuucaaaccaugCAUAUCCCAGCUGUUUCGGCCuugcugcauu
...(((.(..(((((((((...(((((((((.((((.....))))....(((((...(((.(((...))).)))......))))).............)))))))))...))).))))))..).))).

Structure
uug   g ag      -   ugu         uggaaauaacuuccuagc     ---ggc   a   a 
   gug a  aaggcc aag   uugggaugu                  uggcu      cua gaa  
   ||| |  |||||| |||   |||||||||                  |||||      ||| ||| u
   uac u  uuCCGG UUU   GACCCUAUA                  gccga      gau cuu  
--u   g cg      C   GUC         -----Cguaccaaacuuu     gaaaca   a   u 


Annotation confidence Not enough data
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Genome context
Chr4: 14653011-14653138 [-]

Database links

Mature osa-miR5511

Accession MIMAT0022144
Description Oryza sativa osa-miR5511 mature miRNA
Sequence 98 - CAUAUCCCAGCUGUUUCGGCC - 118
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53