Stem-loop osa-MIR5516a

Accession

MI0019035

Description

Oryza sativa osa-MIR5516a precursor miRNA

Gene family

MIPF0001595; MIR5516

Literature search

3 open access papers mention osa-MIR5516a
(4 sentences)

Sequence

ggaggugggagucaaaccauaucaguuuccgugggagugagaagcauggggaaauuuagcccaaCUCAUUGCUUCGGUAGGCUGGcgaccaauuc
....((((........)))).((((((((((.((.((((((.....((((.........)))).)))))).)).))).)))))))..........

Structure

ggaggugggagucaaaccaua       -   u  g      aagca    gaa 
                     ucaguuu ccg gg agugag     uggg   a
                     ||||||| ||| || ||||||     ||||   u
                     GGUCGGA GGC UC UUACUC     accc   u
-----------cuuaaccagc       U   U  G      ----a    gau 

Annotation confidence Not enough data

Genome context

Chr5: 13979418-13979512 [-]

Mature osa-miR5516a

• Accession: MIMAT0022150
• Description: Oryza sativa osa-miR5516a mature miRNA
• Sequence: 65 - CUCAUUGCUUCGGUAGGCUGG - 85
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53


2. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207