miRBase entry: osa-MIR5534a

Stem-loop osa-MIR5534a


Accession
MI0019054
Description
Oryza sativa osa-MIR5534a precursor miRNA
Gene family
MIPF0001324; MIR5534


Sequence

6 reads, 8 reads per million, 2 experiments
aacuuuagcgccuUGACGACAACAGCUAGAAUGGucgcggcgacgaaggauugucccccgaugaggccgccauucuagcuguugucgucgaggcgcuaaagu
.((((((((((((((((((((((((((((((((((.((..((.((..(((...)))..)).))..)).))))))))))))))))))))))))))))))))))

Structure
a                                  c  gg  a  aa   u 
 acuuuagcgccuUGACGACAACAGCUAGAAUGGu gc  cg cg  gga  
 |||||||||||||||||||||||||||||||||| ||  || ||  ||| u
 ugaaaucgcggagcugcuguugucgaucuuaccg cg  gu gc  ccu  
-                                  c  ga  a  cc   g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr11: 6404295-6404396 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR5534a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR5534a

Accession MIMAT0022169
Description Oryza sativa osa-miR5534a mature miRNA
Sequence 14 - UGACGACAACAGCUAGAAUGG - 34
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53