Stem-loop osa-MIR5540

Accession

MI0019061

Description

Oryza sativa osa-MIR5540 precursor miRNA

Gene family

MIPF0001604; MIR5160

Literature search

1 open access papers mention osa-MIR5540
(1 sentences)

Sequence

63 reads, 48 reads per million, 2 experiments

uuuugcgauaauauaacgucgaucucgcacgaucucgcacaaccguugcgcgaaaaugacguggaugugacauugcagacgguauugcgcauugaaaguacgagaccgcaccgugcacgauaauuaaucacuaauuauuauuagcuaauaguuaauuauguacuugaucacuaauuaaauggagccgguuaauacugucgcagacuguuucagcaagaccucgcucuuucauuucguaagaccgcgcggucucgcacauagcccacgcgauaccgccugcgacgucacgcauccguuauuuucgcgcaaugaUUGUGCGAGAUCGACGGUAUAuuuucgcaaa
.(((((((.((((((.((((((((((((((((((..........(((((((((((((((((.((.((((((.((((((.((((((((((........((.(((((((((.(.((..((((((((((((((.....(((.(((((((...))))))).)))....))))...))))))...(((((.((((....(((..(((...)))..)))...))))..)))))......))))...)).).))))))))).))........)))))))))).)))))).))))))..))))))))))))))))))))))))))))))))))))).)))))).)))))))

Structure

u       u      a                  ucgcacaacc                 u  -a      a      a          cauugaaa  a         a c  -gc    --------------------------------------------------------      ---    cuaau   u       a 
 uuugcga aauaua cgucgaucucgcacgauc          guugcgcgaaaaugacg gg  ugugac uugcag cgguauugcg        gu cgagaccgc c gu   acga                                                        uaauua   auca     uau auuagcu  
 ||||||| |||||| ||||||||||||||||||          ||||||||||||||||| ||  |||||| |||||| ||||||||||        || ||||||||| | ||   ||||                                                        ||||||   ||||     ||| ||||||| a
 aaacgcu uuAUAU GCAGCUAGAGCGUGUUag          uaacgcgcuuuuauugc cu  gcacug agcguc gccauagcgc        ca gcucuggcg g ca   ugcu                                                        auuaau   uagu     gua uaauuga  
-       u      G                  ----------                 -  ac      c      c          acccgaua  c         c c  gaa    uuacuuucucgcuccagaacgacuuugucagacgcugucauaauuggccgagguaa      cac    -ucau   u       u 

Annotation confidence Not enough data

Genome context

Chr1: 35552728-35553070 [-]

Mature osa-miR5540

• Accession: MIMAT0022176
• Description: Oryza sativa osa-miR5540 mature miRNA
• Sequence: 313 - UUGUGCGAGAUCGACGGUAUA - 333
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53