miRBase entry: osa-MIR5542

Stem-loop osa-MIR5542


Accession
MI0019063
Description
Oryza sativa osa-MIR5542 precursor miRNA


Sequence

16 reads, 12 reads per million, 2 experiments
uucuacggucUUUGAGAAGGUAUCAUGAGAUacaaaaaauuuaguguaaaauuuaguaucuuaugauaccucauaguaccuagguaccauaagauacuaaauuuacaauagaaaaaaugguaccuugugauaccuccucaaggaacguaaaa
...((((.((((((((.((((((((((((.(((......((((.((((((.((((((((((((((.(((((..........))))).)))))))))))))))))))).)))).......))).)))))))))))).)))))))).))))...

Structure
uuc    g        A            A   -aaaaaa    g      a              a     caua 
   uacg ucUUUGAG AGGUAUCAUGAG Uac       uuua uguaaa uuuaguaucuuaug uaccu    g
   |||| |||||||| |||||||||||| |||       |||| |||||| |||||||||||||| |||||     
   augc aggaacuc uccauaguguuc aug       agau acauuu aaaucauagaauac augga    u
aaa    a        c            c   guaaaaa    a      -              c     ucca 


Annotation confidence Not enough data
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Genome context
Chr4: 32797606-32797757 [-]

Database links

Mature osa-miR5542

Accession MIMAT0022178
Description Oryza sativa osa-miR5542 mature miRNA
Sequence 11 - UUUGAGAAGGUAUCAUGAGAU - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53