Stem-loop cel-mir-5553

Accession

MI0019074

Description

Caenorhabditis elegans cel-mir-5553 precursor miRNA

Sequence

130 reads, 2 reads per million, 8 experiments

aagggucgcauuuauacgaaauggucUUGCCACGCGCCAUCCAUUGAUUuuuaaaucuuuuuuaaUCAAUGGGUAGCACGUGGCAAGAcuauuuugcauaaacaaacccu
.(((((....(((((.((((((((((((((((((.((.(((((((((((..............))))))))))).)).)))))))))))))))))).)))))...)))))

Structure

a     cgca     a                  C  C           uuuaaa 
 agggu    uuuau cgaaauggucUUGCCACG GC AUCCAUUGAUU      u
 |||||    ||||| |||||||||||||||||| || |||||||||||       
 uccca    aaaua guuuuaucAGAACGGUGC CG UGGGUAACUaa      c
-     -aac     c                  A  A           uuuuuu 

Annotation confidence Not enough data

Genome context

chrX: 8077555-8077664 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cel-mir-5553

Mature cel-miR-5553-5p

• Accession: MIMAT0022197
• Description: Caenorhabditis elegans cel-miR-5553-5p mature miRNA
• Sequence: 27 - UUGCCACGCGCCAUCCAUUGAUU - 49
• Evidence: experimental ; Illumina [1]

Mature cel-miR-5553-3p

• Accession: MIMAT0022198
• Description: Caenorhabditis elegans cel-miR-5553-3p mature miRNA
• Sequence: 66 - UCAAUGGGUAGCACGUGGCAAGA - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21810936
   Age-associated changes in expression of small, noncoding RNAs, including microRNAs, in C. elegans
   "Kato M, Chen X, Inukai S, Zhao H, Slack FJ"
   "RNA (2011) 17:1804-1820