miRBase entry: mtr-MIR2592bm

Stem-loop mtr-MIR2592bm


Accession
MI0019082
Description
Medicago truncatula mtr-MIR2592bm precursor miRNA
Gene family
MIPF0000815; MIR2592

Literature search
1 open access papers mention mtr-MIR2592bm
(2 sentences)

Sequence

cucaagcauuucgCUCGGCAUUCAUGUUUUUCCUUugaaaagauuaaauucuuguuagguugauuuagaugaauguauuaagugucaaugaaugaaccuuauuuguuggcacuugaauaucaucaucuaaaacaagcguagcaaaaauuuauucuuuucaaaGGAAAACAUGAAUGUCGGGUGaaaugcuuga
.(((((((((((((((((((((((((((((.((((((((((((.((((((.((((((.((((.(((((((((..(((((((((((((((((((((...))))))))))))))))).))))..))))))))).).))).)))))).)))))).)))))))))))))))))))))))))))))))))))))))))

Structure
c                             U            u      c      g   - a         au    -                 a 
 ucaagcauuucgCUCGGCAUUCAUGUUUU CCUUugaaaaga uaaauu uuguua guu g uuuagauga  guau uaagugucaaugaauga  
 ||||||||||||||||||||||||||||| |||||||||||| |||||| |||||| ||| | |||||||||  |||| ||||||||||||||||| c
 aguucguaaaGUGGGCUGUAAGUACAAAA GGaaacuuuucu auuuaa aacgau cga c aaaucuacu  uaua guucacgguuguuuauu  
-                             -            u      a      g   a a         ac    a                 c 


Annotation confidence Not enough data
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Genome context
chr5: 2926606-2926798 [+]

Database links

Mature mtr-miR2592bm-5p

Accession MIMAT0022213
Description Medicago truncatula mtr-miR2592bm-5p mature miRNA
Sequence 14 - CUCGGCAUUCAUGUUUUUCCUU - 35
Evidence experimental
Illumina [1]

Mature mtr-miR2592bm-3p

Accession MIMAT0022214
Description Medicago truncatula mtr-miR2592bm-3p mature miRNA
Sequence 163 - GGAAAACAUGAAUGUCGGGUG - 183
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21762498
    Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
    Wang T, Chen L, Zhao M, Tian Q, Zhang WH
    BMC Genomics (2011) 12:367