miRBase entry: mtr-MIR5554c

Stem-loop mtr-MIR5554c


Accession
MI0019088
Description
Medicago truncatula mtr-MIR5554c precursor miRNA
Gene family
MIPF0000815; MIR2592


Sequence

caacaugugaUGUGCAUCUUGAACAAUGGUAUucaagugucaaggaaugcaccucauucuuuugacacuugaauACCAUCGUUGCAGAUGCUCAUCgaaugucgg
..((((.(((((.((((((..(((.((((((((((((((((((((((((.....))))).))))))))))))))))))).)))..)))))).))))).))))...

Structure
-ca    g     U      UG   A                   -     c 
   acau ugaUG GCAUCU  AAC AUGGUAUucaagugucaag gaaug a
   |||| ||||| ||||||  ||| ||||||||||||||||||| ||||| c
   ugua gCUAC CGUAGA  UUG UACCAuaaguucacaguuu cuuac c
ggc    a     U      CG   C                   u     u 


Annotation confidence Not enough data
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Genome context
chr7: 22600323-22600427 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR5554c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR5554c-5p

Accession MIMAT0022225
Description Medicago truncatula mtr-miR5554c-5p mature miRNA
Sequence 11 - UGUGCAUCUUGAACAAUGGUAU - 32
Evidence experimental
Illumina [1]

Mature mtr-miR5554c-3p

Accession MIMAT0022226
Description Medicago truncatula mtr-miR5554c-3p mature miRNA
Sequence 75 - ACCAUCGUUGCAGAUGCUCAUC - 96
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21762498
    Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
    Wang T, Chen L, Zhao M, Tian Q, Zhang WH
    BMC Genomics (2011) 12:367