Stem-loop sequence hsa-mir-5100

Accession

MI0019116 (change log)

Symbol

HGNC:MIR5100

Description

Homo sapiens miR-5100 stem-loop

Literature search

4 open access papers mention hsa-mir-5100
(9 sentences)

Stem-loop

   ccaugagg       a  ---   ----a     ---        gga  g   cu      g   ga 
5'         agcuggc gu   ggg     uggcc   ugggggua   gc ugg  ucugga cua  c
           ||||||| ||   |||     |||||   ||||||||   || |||  |||||| |||  c
3'         ucgacug cg   ucc     accgg   aucuccgu   cg acc  agacuu ggu  a
   --------       a  ggu   aggac     uca        -gg  -   cu      g   ac 

Deep sequencing

46912 reads, 108 reads per million, 152 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr10: 42997563-42997681 [+]
• Overlapping transcripts:

  intergenic

Database links

• HGNC:MIR5100
• RNAcentral:URS000075DAD1_9606
• miRBase Tracker:MI0019116

Mature sequence hsa-miR-5100

• Accession: MIMAT0022259
• Sequence: 68 - uucagaucccagcggugccucu - 89
• Deep sequencing: 46891 reads, 152 experiments
• Evidence: experimental; SOLiD [1]
• Database links:
  • RNAcentral:URS0000079F78_9606
• Predicted targets:
  • TargetMiner:hsa-miR-5100
  • TargetScanVert:hsa-miR-5100
  • miRDB:hsa-miR-5100

References

1. PMID:21895886 "Deep sequencing of short RNAs reveals novel microRNAs in minor salivary glands of patients with Sjogren's syndrome" Tandon M, Gallo A, Jang SI, Illei GG, Alevizos I Oral Dis. 18:127-131(2012).