miRBase entry: cel-mir-5592-2

Stem-loop cel-mir-5592-2


Accession
MI0019154
Description
Caenorhabditis elegans cel-mir-5592-2 precursor miRNA
Gene family
MIPF0001366; mir-5592


Sequence

30572 reads, 380 reads per million, 16 experiments
CGGCCCUUACCGUUUAAUACAUGgugcaucgaccgggaacaUGUAUUAAACGGUAAGGGCCGGC
(((((((((((((((((((((((.(.(........).).)))))))))))))))))))))))..

Structure
--                       g g auc 
  CGGCCCUUACCGUUUAAUACAUG u c   g
  ||||||||||||||||||||||| | |    
  GCCGGGAAUGGCAAAUUAUGUac a g   a
CG                       a g gcc 


Annotation confidence Not enough data
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Genome context
chrX: 13759247-13759310 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cel-mir-5592-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-5592-5p

Accession MIMAT0022305
Description Caenorhabditis elegans cel-miR-5592-5p mature miRNA
Sequence 1 - CGGCCCUUACCGUUUAAUACAUG - 23
Evidence not_experimental
Database links

Mature cel-miR-5592-3p

Accession MIMAT0022306
Description Caenorhabditis elegans cel-miR-5592-3p mature miRNA
Sequence 42 - UGUAUUAAACGGUAAGGGCCGGC - 64
Evidence not_experimental
Database links

References

  1. PubMed ID: 21911355
    miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
    "Nucleic Acids Res (2012) 40:37-52