miRBase entry: cin-mir-5609

Stem-loop cin-mir-5609


Accession
MI0019175
Description
Ciona intestinalis cin-mir-5609 precursor miRNA


Sequence

10 reads, 5 reads per million, 2 experiments
AGCAGUAGCGAGCCUUGAACCCauuacaucuggGUUACAGGUCGGUGCGCUAAC
(((.(((.(((.(((..((((((.......))))))..)))))).))))))...

Structure
---   A   G   G   UG      uu 
   AGC GUA CGA CCU  AACCCa  a
   ||| ||| ||| |||  ||||||  c
   UCG CGU GCU GGA  UUGggu  a
CAA   -   G   -   CA      cu 


Annotation confidence Not enough data
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Genome context
10q: 1223268-1223321 [+]

Database links

Mature cin-miR-5609-5p

Accession MIMAT0022345
Description Ciona intestinalis cin-miR-5609-5p mature miRNA
Sequence 1 - AGCAGUAGCGAGCCUUGAACCC - 22
Evidence not_experimental

Mature cin-miR-5609-3p

Accession MIMAT0022346
Description Ciona intestinalis cin-miR-5609-3p mature miRNA
Sequence 34 - GUUACAGGUCGGUGCGCUAAC - 54
Evidence not_experimental

References

  1. PubMed ID: 21911355
    miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
    "Nucleic Acids Res (2012) 40:37-52