miRBase entry: cin-mir-5611

Stem-loop cin-mir-5611


Accession
MI0019177
Description
Ciona intestinalis cin-mir-5611 precursor miRNA


Sequence

9 reads, 6 reads per million, 1 experiments
CGUCUUGGAUCGUAAUUCUGUGacgugacaaacggcuuuuguugcgucgCAAAAUUUCGUUCUAAAGAUUUU
.((((((((.((.((((.((((((((((((((.....)))))))))))))).)))).)).))).)))))...

Structure
--C     -   U  U    C              c 
   GUCUU GGA CG AAUU UGUGacgugacaaa g
   ||||| ||| || |||| |||||||||||||| g
   UAGAA UCU GC UUAA ACgcugcguuguuu c
UUU     A   U  U    A              u 


Annotation confidence Not enough data
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Genome context
scaffold_71: 128684-128755 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from cin-mir-5611
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-5611-5p

Accession MIMAT0022349
Description Ciona intestinalis cin-miR-5611-5p mature miRNA
Sequence 1 - CGUCUUGGAUCGUAAUUCUGUG - 22
Evidence not_experimental

Mature cin-miR-5611-3p

Accession MIMAT0022350
Description Ciona intestinalis cin-miR-5611-3p mature miRNA
Sequence 50 - CAAAAUUUCGUUCUAAAGAUUUU - 72
Evidence not_experimental

References

  1. PubMed ID: 21911355
    miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
    "Nucleic Acids Res (2012) 40:37-52