miRBase entry: ath-MIR5640

Stem-loop ath-MIR5640


Accession
MI0019213
Description
Arabidopsis thaliana ath-MIR5640 precursor miRNA

Literature search
1 open access papers mention ath-MIR5640
(24 sentences)

Sequence

aaggugaggaacaugaacaccaguuacauuauaaacuuuccuguguuacaaacuuauauauuugaUGAGAGAAGGAAUUAGAUUCAugaaaauauuaaucauuuuaagguuaguaguacuuauuggcuguucuugcaaaaccaaugguaaaguaugugaugaaaccauuagaacuuuuugauucaagcaucugaguguucuaucagaggguuagagccaaucuaaguuaagaacuauauuuggggucucaucacauuaccauugguuucaaaagaacagugagaaguccuauucaccguauacagauuggucuuuucaggaaucuaacucacucucugaucaacuaucuagccuugaaauacaggcauguuuuucuguaccugguguucauguuggucucaccc
..(((((((((((((((((((((.((((....((((...((((((((.(((..(((.(((.(((((.(((((..((.((((((((.((((((.(((((((.......(((.(((((.((((.((.(((((((((...((((((((((((....(((((((((.(((.....(((((((((((...(((((....)))))..)))))))))))....((((....((((...))))....))))))).)))))))))))))))))))))...))))))))).)))))).))))).))).......))))))).)))))).)))))))).))..))))).))))).))).)))..))).))))))))...))))...)))).))))))))))))))..))))))).

Structure
aa       --              u    uuau    uuu        a   ac   u   u     G     AG  A        A      u       auuuuaa   u     u    a  g         gca            aagu         a   --------------------------auuag           uca     c 
  ggugagg  aacaugaacaccag uaca    aaac   ccuguguu caa  uua aua uugaU AGAGA  GA UUAGAUUC ugaaaa auuaauc       ggu aguag acuu uu gcuguucuu   aaaccaauggua    augugauga acc                               aacuuuuugau   agcau u
  |||||||  |||||||||||||| ||||    ||||   |||||||| |||  ||| ||| ||||| |||||  || |||||||| |||||| |||||||       ||| ||||| |||| || |||||||||   ||||||||||||    ||||||||| |||                               |||||||||||   |||||  
  ccacucu  uuguacuugugguc augu    uuug   ggacauaa guu  gau uau aacua ucucu  cu aaucuaag acuuuu ugguuag       cca uuauc ugaa ga ugacaagaa   uuugguuaccau    uacacuacu ugg                               uugggagacua   uugug g
-c       gg              c    -cuu    uac        a   cc   c   c     g     ca  c        g      c       acauaug   c     c    -  g         aac            ----         c   gguuuauaucaagaauugaaucuaaccgaga           -uc     a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 1653221-1653624 [-]

Database links

Mature ath-miR5640

Accession MIMAT0022401
Description Arabidopsis thaliana ath-miR5640 mature miRNA
Sequence 66 - UGAGAGAAGGAAUUAGAUUCA - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176