miRBase entry: ath-MIR5642a

Stem-loop ath-MIR5642a


Accession
MI0019215
Description
Arabidopsis thaliana ath-MIR5642a precursor miRNA
Gene family
MIPF0001347; MIR5642

Literature search
2 open access papers mention ath-MIR5642a
(7 sentences)

Sequence

cauggauccgccuaggcugucccgagugugagcgaggugugagugucgcccaugggcaucgacaccuugcggcuaggaacuggaacgagacggguagcaaagauuucgaguagcacuucauacuaccguggguuuuuuaaaccuuccccuaguuuuguugauguuauuccgagaauuagcaaaccguaacgaagauguucuuggcaaccaucuuuugaugggaguccggcuguucgaaagccggccaagggugaugaacgaaaugugaacccuugucucgccuagguuggaugggcgugcuucguuggaaagcauggauccgccuaggcugucccgaagguaUCUCGCGCUUGUACGGCUUUggcucggauucg
...(((((((((.(((((((..((((((((((((((((((..(((((.......)))))..))))))))).(((((((((.....((..((((...((.((..(((((((((((((..((.((((....((((((...)))))).....))))..))..).))))))).))))).)).))...))))..)).....)))))))))..(((((....)))))..(.((((((.......)))))))(((((((.....((.....))..)))))))....((((((((.((((...((((((((....).))))))).))))))))))))...((....))....))))))))).))))))).)))..)))))).

Structure
cau      --   u       cc         ---------------------------------------------------------------------------------------------------gcgaggugugagugucgcccaugggcaucgacaccuugcg         uggaa  ag    gua  a  ga     -       - uu  -u    -ccgu      u 
   ggaucc  gcc aggcugu  cgaguguga                                                                                                                                           gcuaggaac     cg  acgg   gc aa  uuucg aguagca c  ca  acua     ggguuu  
   ||||||  ||| |||||||  |||||||||                                                                                                                                           |||||||||     ||  ||||   || ||  ||||| ||||||| |  ||  ||||     |||||| u
   cuuagg  cgg UUCGGCA  GUUCGCGCU                                                                                                                                           cgguucuug     gc  ugcc   cg uu  agagc uuauugu g  gu  ugau     uccaaa  
--g      cu   U       -U         CUauggaagcccugucggauccgccuagguacgaaagguugcuucgugcggguagguuggauccgcucuguucccaaguguaaagcaaguagugggaaccggccgaaagcuugucggccugaggguaguuuucuaccaa         uagaa  aa    aaa  a  -a     c       a uu  uu    ccccu      u 


Annotation confidence Not enough data
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Genome context
chr3: 14196774-14197147 [+]

Database links

Mature ath-miR5642a

Accession MIMAT0022403
Description Arabidopsis thaliana ath-miR5642a mature miRNA
Sequence 343 - UCUCGCGCUUGUACGGCUUU - 362
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176