miRBase entry: ath-MIR781b

Stem-loop ath-MIR781b


Accession
MI0019231
Description
Arabidopsis thaliana ath-MIR781b precursor miRNA
Gene family
MIPF0001137; MIR781

Literature search
2 open access papers mention ath-MIR781b
(2 sentences)

Sequence

auUUAGAGUUUUCUGGAUACUUAaaaguuaauaucgaagaagcccucucuuuguuaguaacuaauaaguauccagaaaacucuaauu
..(((((((((((((((((((((..(((((.((.((((((.......)))))).)).)))))..)))))))))))))))))))))..

Structure
au                     aa     a  u      ag 
  UUAGAGUUUUCUGGAUACUUA  aguua ua cgaaga  c
  |||||||||||||||||||||  ||||| || ||||||  c
  aaucucaaaagaccuaugaau  ucaau au guuucu  c
uu                     aa     g  u      cu 


Annotation confidence Not enough data
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Genome context
chr1: 7423521-7423607 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR781b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ath-miR781b

Accession MIMAT0022420
Description Arabidopsis thaliana ath-miR781b mature miRNA
Sequence 3 - UUAGAGUUUUCUGGAUACUUA - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176