miRBase entry: gma-MIR5674a

Stem-loop gma-MIR5674a


Accession
MI0019271
Description
Glycine max gma-MIR5674a precursor miRNA
Gene family
MIPF0001447; MIR5674

Literature search
2 open access papers mention gma-MIR5674a
(2 sentences)

Sequence

cacuuggguugaugguuuucaauacaauuucauuuaagaaguuaguugcuucuuucagcuuaccaacaaugaagccacacaaucaagaauuacaagugacaacauuaacaaaaaucccuuugacaaccauuuuaggaaaaaaaaaccauacaaguuuauguuuacauaaacagucaaUAAUUGUGUUGUACAUUAUCAcauuagaguc
.((((.((((((((((...((((((((((......(((((((.....)))))))...((((..........))))(((.................))).....................(((((..((......)).................(((((((....))))))).))))).))))))))))...))))))).))).)))).

Structure
c    g   -       uuu          ----------------------------------------------------------------------------------------------------------------------ucauuu       u 
 acuu ggu ugauggu   caauacaauu                                                                                                                            aagaagu a
 |||| ||| |||||||   ||||||||||                                                                                                                            ||||||| g
 ugag uua ACUAUUA   GUUGUGUUAA                                                                                                                            uucuucg u
c    a   c       CAU          Uaacugacaaauacauuuguauuugaacauaccaaaaaaaaaggauuuuaccaacaguuucccuaaaaacaauuacaacagugaacauuaagaacuaacacaccgaaguaacaaccauucgacu       u 


Annotation confidence Not enough data
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Genome context
chr9: 39974819-39975026 [-]

Database links

Mature gma-miR5674a

Accession MIMAT0022459
Description Glycine max gma-miR5674a mature miRNA
Sequence 178 - UAAUUGUGUUGUACAUUAUCA - 198
Evidence experimental
Illumina [1], RT-PCR [1]

References

  1. PubMed ID: 21219599
    Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing
    Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS
    BMC Plant Biol (2011) 11:5