miRBase entry: bra-MIR1885b

Stem-loop bra-MIR1885b


Accession
MI0019329
Description
Brassica rapa bra-MIR1885b precursor miRNA
Gene family
MIPF0001505; MIR1885

Literature search
6 open access papers mention bra-MIR1885b
(13 sentences)

Sequence

uugucucacaacuguauccauccugucuucacgagcuuccucuagaagaugugcgcagagucuuucuaagucacacucauaaaaaauucaaagaaaaggaaucauacuuucauugauaaugaaaucaauagagagaaugauacugagcucuuacauucgauuagaugcgauaaucuuauccucuaauugcuuguaagagcugaugaccaauggaucauccucuauugaucucuucaucaaugaaagguaugauucccuuucuuugaaaucacuuuugaaugugacuaagaaagccucuacgUACAUCUUCUCCGCGGAAGCUCaugaaaacaagguagaaccaauuguggacaaa
(((((.(((((.((..((.(((.(((.((((.((((((((.(.((((((((((((.((((.((((((.(((((((.(((.......((((((((((.((((((((((((((((((((...((.((((((((((............((((((((((..((((((((.(.((((....)))))))))))))..))))))))))(((((((...)).))))))))))))))).))...)))))))))).)))))))))).))))))))))........))).))))))).)))))).)))).))))))))))))..).)))))))).)))).))).))).))..)).)))))))))).

Structure
-     u     c  ua  c   c   c    c        u -u            c    u      a       c   -uaaaaaa          a          -          aau  a          ------agaaugauacug          uu        u c    a 
 uuguc cacaa ug  uc auc ugu uuca gagcuucc c  agaagaugugcg agag cuuucu agucaca uca        uucaaagaaa ggaaucauac uuucauugau   ga aucaauagag                  agcucuuaca  cgauuaga g gaua u
 ||||| ||||| ||  || ||| ||| |||| |||||||| |  |||||||||||| |||| |||||| ||||||| |||        |||||||||| |||||||||| ||||||||||   || ||||||||||                  ||||||||||  |||||||| | ||||  
 aacag guguu ac  ag ugg aca aagu CUCGAAGG G  UCUUCUACAUgc ucuc gaaaga ucagugu agu        aaguuucuuu ccuuaguaug aaaguaacua   cu uaguuaucuc                  ucgagaaugu  guuaaucu c cuau c
a     -     a  ca  a   a   a    a        C CC            a    c      a       a   uuucacua          c          g          cuu  c          cuacuagguaaccaguag          uc        - -    u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature bra-miR1885b

Accession MIMAT0023015
Description Brassica rapa bra-miR1885b mature miRNA
Sequence 302 - UACAUCUUCUCCGCGGAAGCUC - 323
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22025521
    Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa
    "Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y"
    "J Exp Bot (2012) 63:1025-1038