Stem-loop ola-mir-199a-2

Accession

MI0019455

Description

Oryzias latipes ola-mir-199a-2 precursor miRNA

Gene family

MIPF0000040; mir-199

Literature search

2 open access papers mention ola-mir-199a-2
(2 sentences)

Sequence

ucucuaucccccaccccgccugCCCAGUGUUCAGACUACCUGUUccuccagcuauaacugaACAGUAGUCUGCACAUUGGUUAggcuagacugggagccacaca
.........((((....(((((.(((((((.((((((((.(((((..............))))))))))))).))))))).))))).....)))).........

Structure

ucucuaucc    -cccc     C       U        C     cuccag 
         ccca     gccug CCAGUGU CAGACUAC UGUUc      c
         ||||     ||||| ||||||| |||||||| |||||       
         gggu     cggAU GGUUACA GUCUGAUG ACAag      u
acacaccga    cagau     U       C        -     ucaaua 

Annotation confidence Not enough data

Genome context

8: 9465167-9465270 [+]

Mature ola-miR-199a-5p

• Accession: MIMAT0022538
• Description: Oryzias latipes ola-miR-199a-5p mature miRNA
• Sequence: 23 - CCCAGUGUUCAGACUACCUGUU - 44
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-199a-3p

• Accession: MIMAT0022539
• Description: Oryzias latipes ola-miR-199a-3p mature miRNA
• Sequence: 62 - ACAGUAGUCUGCACAUUGGUUA - 83
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8