miRBase entry: ola-mir-9a-1

Stem-loop ola-mir-9a-1


Accession
MI0019515
Description
Oryzias latipes ola-mir-9a-1 precursor miRNA
Gene family
MIPF0000014; mir-9

Literature search
4 open access papers mention ola-mir-9a-1
(15 sentences)

Sequence

gggaagccuucgggguugauuguuaUCUUUGGUUAUCUAGCUGUAUGAgugauguacauucuucAUAAAGCUAGAUAACCGAAAGuaacaagaaucccauuacacucc
((....))...((((((..(((((((.(((((((((((((((.((((((.((.......)))))))).))))))))))))))).))))))).))))))..........

Structure
gggaagccuuc      ga       C               G      u  ug 
           gggguu  uuguuaU UUUGGUUAUCUAGCU UAUGAg ga  u
           ||||||  ||||||| ||||||||||||||| |||||| ||  a
           cccuaa  aacaauG AAGCCAAUAGAUCGA AUAcuu cu  c
-ccucacauua      -g       A               A      -  ua 


Annotation confidence Not enough data
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Genome context
16: 23834590-23834697 [+]

Database links

Mature ola-miR-9a-3p

Accession MIMAT0022537
Description Oryzias latipes ola-miR-9a-3p mature miRNA
Sequence 65 - AUAAAGCUAGAUAACCGAAAG - 85
Evidence experimental
SOLiD [1]

Mature ola-miR-9a-5p

Accession MIMAT0022636
Description Oryzias latipes ola-miR-9a-5p mature miRNA
Sequence 26 - UCUUUGGUUAUCUAGCUGUAUGA - 48
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8