miRBase entry: ola-mir-1-2

Stem-loop ola-mir-1-2


Accession
MI0019525
Description
Oryzias latipes ola-mir-1-2 precursor miRNA
Gene family
MIPF0000038; mir-1

Literature search
4 open access papers mention ola-mir-1-2
(15 sentences)

Sequence

acaauuacuucccugggguacauacuucuuuauguacccauaugaagauaugaaagcuaUGGAAUGUAAAGAAGUAUGUAuucucggugaggugcgagucu
.....((((((((.(((((((((((((((((((((.(((((((....)))))........)).))))))))))))))))))))).)).)))))).......

Structure
--acaau      -  u                     a  --------     g 
       uacuuc cc gggguacauacuucuuuaugu cc        cauau a
       |||||| || ||||||||||||||||||||| ||        |||||  
       guggag gg ucuuAUGUAUGAAGAAAUGUA GG        guaua a
ucugagc      u  c                     A  Uaucgaaa     g 


Annotation confidence Not enough data
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Genome context
17: 29410125-29410225 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ola-mir-1-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ola-miR-1-3p

Accession MIMAT0022558
Description Oryzias latipes ola-miR-1-3p mature miRNA
Sequence 60 - UGGAAUGUAAAGAAGUAUGUA - 80
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8