miRBase entry: ola-mir-29b-2

Stem-loop ola-mir-29b-2


Accession
MI0019545
Description
Oryzias latipes ola-mir-29b-2 precursor miRNA
Gene family
MIPF0000009; mir-29

Literature search
2 open access papers mention ola-mir-29b-2
(17 sentences)

Sequence

guuggucuucccuaagaagcugguuucacguggugguuuagaugugucuuucuguugucUAGCACCAUUUGAAAUCAGUGUucuuggggacagcaggac
((((....((((((((((((((((((((.((((((..(((((((...........))))))))))))).)))))))))).)))))))))))))).....

Structure
-----    gucu          -          c      gu       uguc 
     guug    ucccuaagaa gcugguuuca guggug  uuagaug    u
     ||||    |||||||||| |||||||||| ||||||  |||||||    u
     cgac    agggguucuU UGACUAAAGU UACCAC  GAUcugu    u
cagga    ----          G          U      --       uguc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
23: 8740355-8740453 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ola-mir-29b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ola-miR-29b

Accession MIMAT0022569
Description Oryzias latipes ola-miR-29b mature miRNA
Sequence 60 - UAGCACCAUUUGAAAUCAGUGU - 81
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8