miRBase entry: dre-mir-2185-2

Stem-loop dre-mir-2185-2


Accession
MI0019584
Description
Danio rerio dre-mir-2185-2 precursor miRNA
Gene family
MIPF0001300; mir-2185


Sequence

175 reads, 44 reads per million, 11 experiments
cagguucucuggcuugacguccCGGUGCAGGACUCCGCGGCUCucgcaguguuucagaGCCGCGAUCAGCUGCACCAGCacuuucuuggccagacgcu
..(((..(((((((.((.((.(.(((((((.....(((((((((...........))))))))).....))))))).).))..))..))))))).)))

Structure
ca   uc       -u  -c  c C       GACUC         cgca 
  ggu  ucuggcu  ga  gu c GGUGCAG     CGCGGCUCu    g
  |||  |||||||  ||  || | |||||||     |||||||||    u
  ucg  agaccgg  cu  ca G CCACGUC     GCGCCGaga    g
--   -c       uu  uu  C A       GACUA         cuuu 


Annotation confidence Not enough data
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Genome context
chr17: 39778647-39778744 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dre-mir-2185-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-2185-5p

Accession MIMAT0011289
Description Danio rerio dre-miR-2185-5p mature miRNA
Sequence 23 - CGGUGCAGGACUCCGCGGCUC - 43
Evidence experimental
454 [1]
Database links
Predicted targets

Mature dre-miR-2185-3p

Accession MIMAT0011290
Description Danio rerio dre-miR-2185-3p mature miRNA
Sequence 59 - GCCGCGAUCAGCUGCACCAGC - 79
Evidence experimental
454 [1]

References

  1. PubMed ID: 19397817
    Parallel DNA pyrosequencing unveils new zebrafish microRNAs
    Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA
    BMC Genomics (2009) 10:195