miRBase entry: mtr-MIR5748

Stem-loop mtr-MIR5748


Accession
MI0019673
Description
Medicago truncatula mtr-MIR5748 precursor miRNA


Sequence

uguuugcuuuuaagaacuuuuaaucacauuuguuuuucuucuucucauauuagagucuccgauagaagucgACAAAGACAUUGGAAGGCUUAuaggcaaggc
..(((((((.((((..((((((((....(((((((((((((..(((......))).....)).)))))..))))))...)))))))).)))).)))))))..

Structure
ug       u    aa        caca      --     -  ---uu   au 
  uuugcuu uaag  cuuuuaau    uuuguu  uuucu uc     cuc  a
  ||||||| ||||  ||||||||    ||||||  ||||| ||     |||   
  gaacgga AUUC  GAAGGUUA    AAACAg  gaaga ag     gag  u
cg       u    -G        -CAG      cu     u  ccucu   au 


Annotation confidence Not enough data
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Genome context
chr3: 3472490-3472591 [+]

Database links

Mature mtr-miR5748

Accession MIMAT0023128
Description Medicago truncatula mtr-miR5748 mature miRNA
Sequence 72 - ACAAAGACAUUGGAAGGCUUA - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553