miRBase entry: mtr-MIR171g

Stem-loop mtr-MIR171g


Accession
MI0019677
Description
Medicago truncatula mtr-MIR171g precursor miRNA
Gene family
MIPF0000104; MIR171_2

Literature search
8 open access papers mention mtr-MIR171g
(60 sentences)

Sequence

gcuucagcugcaaaaguauacauggcgugauauugauccggcucaucuauaucuucaaguucaaucauccauauucauaucaauuucagaCGAGCCGAAUCAAUAUCACUCuuguuugcuucauugcauauuaauu
........((((((((((.(((.((.(((((((((((.((((((.(((.......................................))).)))))).))))))))))))).))).)))))..)))))........

Structure
gcuucagc     --     u   u  c           c      a   auaucuucaaguucaauc 
        ugcaa  aagua aca gg gugauauugau cggcuc ucu                  a
        |||||  ||||| ||| || ||||||||||| |||||| |||                  u
        acguu  uucgu ugu CU CACUAUAACUA GCCGAG aga                  c
uuaauuau     ac     u   u  -           A      C   cuuuaacuauacuuauac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature mtr-miR171g

Accession MIMAT0023132
Description Medicago truncatula mtr-miR171g mature miRNA
Sequence 91 - CGAGCCGAAUCAAUAUCACUC - 111
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553