miRBase entry: mtr-MIR5754

Stem-loop mtr-MIR5754


Accession
MI0019681
Description
Medicago truncatula mtr-MIR5754 precursor miRNA


Sequence

ugggauaaagauuccaugaugaguaUAUUGCACUCAUCUUCCAUGGCuguuuucuuccuccaaggaugucaauugugccauggagaagagugcaauaaacuuguugugguaucuaucgacaaga
...(((..((((.(((((((((((.((((((((((.(((.(((((((.(((..(.((((...)))).)..)))...)))))))))).)))))))))).))))))))))).))))))).......

Structure
----ugg   aa    u           a          A   U       --u   uu u    c 
       gau  agau ccaugaugagu UAUUGCACUC UCU CCAUGGC   guu  c uccu  
       |||  |||| ||||||||||| |||||||||| ||| |||||||   |||  | |||| c
       cua  ucua gguguuguuca auaacgugag aga gguaccg   uaa  g agga  
agaacag   --    u           a          a   -       ugu   cu u    a 


Annotation confidence Not enough data
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Genome context
chr4: 24463751-24463874 [-]

Database links

Mature mtr-miR5754

Accession MIMAT0023136
Description Medicago truncatula mtr-miR5754 mature miRNA
Sequence 26 - UAUUGCACUCAUCUUCCAUGGC - 47
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553