miRBase entry: mtr-MIR5225c

Stem-loop mtr-MIR5225c


Accession
MI0019688
Description
Medicago truncatula mtr-MIR5225c precursor miRNA
Gene family
MIPF0001388; MIR5225


Sequence

gggacuuuagUCGCAGGAGAGAUGACACCUUCuauuacuaaugacaugauuuuauagcaauuuuaacagaaguugucaucuuucuuugacugaaguuca
.((((((((((((.(((((((((((((.(((((.(((..(.((..(((....)))..)).)..))).))))).))))))))))))))))))))))))).

Structure
g            C             C     a   cu a  ac   a 
 ggacuuuagUCG AGGAGAGAUGACA CUUCu uua  a ug  aug u
 |||||||||||| ||||||||||||| ||||| |||  | ||  |||  
 cuugaagucagu uucuuucuacugu gaaga aau  u ac  uau u
a            -             u     c   uu a  ga   u 


Annotation confidence Not enough data
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Genome context
chr6: 2545198-2545296 [+]

Database links

Mature mtr-miR5225c

Accession MIMAT0023143
Description Medicago truncatula mtr-miR5225c mature miRNA
Sequence 11 - UCGCAGGAGAGAUGACACCUUC - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553