miRBase entry: mtr-MIR5741d

Stem-loop mtr-MIR5741d


Accession
MI0019692
Description
Medicago truncatula mtr-MIR5741d precursor miRNA
Gene family
MIPF0001392; MIR5741


Sequence

uaauccgaauaaaccaucaauuuagucucuaaauuacacaaauauauaaaacccgucaauuuagucucucaauuguaugauaauccgucaauuuagucuaacaucuagauagcaaagacuaaauugacggauuuuauauaauucagggacuguuuauuauauauacuuguuuaguuuagggacuuaauugaauacgugauuuuUAGGGACUAAAUUGAUGGUUUauucuuuuua
......(((((((((((((((((((((((((((...(((..((((((((............((((((((.((((((((((.((((((((((((((((((................)))))))))))))))))))))))))))).))))))))....))))))))...(((((((((.((...)).))))))))).)))...)))))))))))))))))))))))))))......

Structure
uaaucc                           uua   -----------------------------aa        aacccgucaauu        c          u                  aacaucu 
      gaauaaaccaucaauuuagucucuaaa   cac                               auauauaa            uagucucu aauuguauga aauccgucaauuuagucu       a
      |||||||||||||||||||||||||||   |||                               ||||||||            |||||||| |||||||||| ||||||||||||||||||        
      cuuaUUUGGUAGUUAAAUCAGGGAUuu   gug                               uauauauu            gucaggga uuaauauauu uuaggcaguuaaaucaga       g
auuuuu                           uua   cauaaguuaauucagggauuugauuuguuca        --------auuu        c          -                  aacgaua 


Annotation confidence Not enough data
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Genome context
chr7: 30592843-30593076 [+]

Database links

Mature mtr-miR5741d

Accession MIMAT0023147
Description Medicago truncatula mtr-miR5741d mature miRNA
Sequence 204 - UAGGGACUAAAUUGAUGGUUU - 224
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553