Stem-loop sequence mtr-MIR5037b

Accession

MI0019696 (change log)

Description

Medicago truncatula miR5037b stem-loop

Gene family

MIPF0001288; MIR5037

Stem-loop

   -   a   a u     uca   -           a   -ag   c 
5'  agc uuc g aaccc   aag gcuuccacggc uca   uua a
    ||| ||| | |||||   ||| ||||||||||| |||   |||  
3'  ucg aag c uuggg   uuc ugaaggugcug agu   aau u
   u   g   c u     uuc   g           a   gua   g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr7: 23954301-23954389 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR5037b

• mtr-MIR5037c: chr7: 23961112-23961230 [-]
• mtr-MIR5206b: chr7: 23959036-23959156 [-]
• mtr-MIR5037b: chr7: 23954301-23954389 [-]
• mtr-MIR5037a: chr7: 23948126-23948212 [-]

Database links

• miRBase Tracker:MI0019696

Mature sequence mtr-miR5037b

• Accession: MIMAT0023151
• Sequence: 11 - aacccucaaaggcuuccacgg - 31
• Evidence: experimental; Illumina [1]

References

1. PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs" Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC Genes Dev. 25:2540-2553(2011).