Stem-loop mtr-MIR5741e

Accession

MI0019700

Description

Medicago truncatula mtr-MIR5741e precursor miRNA

Gene family

MIPF0001392; MIR5741

Sequence

uacuuugaauaaaccaucaauuuagucucuaaaauaucacucuuucuucaagucccuaaauuauauagaaauaauaguaaucauuaaguauaugaaauucaucaauuuagucuuuaucauaauagcaaggacuaaaauaacagguuuuauauacuuuaaggacuacuuauuauauuuauauguacuuuaaggacuaaauuggagacagugauauuuUAGGGACUAAAUUGAUGGUUUauucuuucau
......(((((((((((((((((((((((((((((((((((...(((((((((((.((((.((((((((.(((((((((.((...((((((((((((((......((((((((((...........))))))))))......))))))))))))))....)).))).)))))).))))))))...)))).)))))....)))))).)))))))))))))))))))))))))))))))))))......

Structure

uacuuu                                   cuu      ----     c    --u        a      -   a  -auu              caucaa          auca 
      gaauaaaccaucaauuuagucucuaaaauaucacu   ucuuca    agucc uaaa   uauauaga auaaua gua uc    aaguauaugaaauu      uuuagucuuu    u
      |||||||||||||||||||||||||||||||||||   ||||||    ||||| ||||   |||||||| |||||| ||| ||    ||||||||||||||      ||||||||||    a
      cuuaUUUGGUAGUUAAAUCAGGGAUuuuauaguga   agaggu    ucagg auuu   guauauuu uauuau cau ag    uucauauauuuugg      aaaucaggaa    a
uacuuu                                   --c      uaaa     a    cau        a      u   c  gaau              acaaua          cgau 

Annotation confidence Not enough data

Genome context

chr8: 23422397-23422643 [-]

Mature mtr-miR5741e

• Accession: MIMAT0023155
• Description: Medicago truncatula mtr-miR5741e mature miRNA
• Sequence: 217 - UAGGGACUAAAUUGAUGGUUU - 237
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553